Requirements

To run optimalTAD you will need the following dependencies:

• C++11

• Python 3

• MPICH2 or Open MPI (for parallel computing)

• Boost

MPICH installation

Linux:

$ sudo apt-get install mpich

MacOS:

$ brew install mpich

Boost installation

Linux:

$ sudo apt-get install boost

MacOS:

$ brew install boost

Please note that the algorithm was tested on Linux and macOS operating systems only, therefore we can’t guarantee that it will work on Windows as well.

The list of python requirments is included in setup.py file and can be installed via pip.